Genetic relationship of maternal lineages in Phetchaburi native cattle
Article Sidebar
Main Article Content
Abstract
Maternally inheritance can be described via mitochondrial DNA (mtDNA) analysis for evolution and genetic diversity study in animals and human, especially in cattle. The genetic relationship and cluster analysis of Phetchaburi native cattle in Thailand was investigated. All 7 semen samples collected from male native cattle breeders in sperm bank collection from Phetchaburi province. The mtDNA at D-loop region (467 bp.) was analyzed and the high variable region (288 bp.) was aligned with reference cattle sequences. The results revealed 26 polymorphic sites. The sequence identity of all samples ranged from 96.8 to 99.7% which most of them similar to Bos taurus (AY515627), except MT-1(MH746114) showed 99% identity to Bos indicus (HQ234738). All mtDNA sequences were classified into 3 haplotypes from 7 sperm samples and the haplotype diversity 0.524. The phylogenetic tree analysis indicated 6 breeders were grouped into B. taurus clade whereas only one breeder was located in B. indicus clade. This current results provide the genetic background of native breeder cattle in Phetchaburi province including genetic diversity and breeder grouping which may have implications for breeding management and conservation of Thai native cattle.
Article Details
This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
References
Aiumlamai, S. (2005). Cow Artificial Insemination Retrieved from dpogenetics: http://www.dpogenetics.com/index.php/article-summary-menu/12-ai-cow.
Avise, J. C., Reeb, C. A. and Saunders, N. C. (1987). Geographic Population Structure and Species Differences in Mitochondrial DNA of Mouthbrooding Marine Catfishes (Ariidae) and Demersal Spawning Toadfishes (Batrachoididae). Evolution. 41:991-1002. doi:10.1111/j.1558-5646.1987.tb05872.x.
Baracaldo, M. I., Barth, A. D. and Bertrand, W. (2007). Steps for Freezing Bovine Semen: From Semen Collection to the Liquid Nitrogen Tank. Retrieved from http://www.uesc.br/cursos/pos_graduacao/mestrado/animal/bibliografia2007/baracaldo_et_at_2007.pdf.
Boettcher, P. J., Steverink, D. W., Beitz, D. C., Freeman, A. E. and McDaniel, B. T. (1996). Multiple herd evaluation of the effects of maternal lineage on yield traits of Holstein cattle. Journal of Dairy Science. 79:655-662. doi:10.3168/jds.S0022-0302(96)76411-1.
Boonyanuwat, K., Suwanamajo, S. and Khumsung, V. (2005). Genetic diversity for sustainable of four Thai Indigenous cattle breeds. Retrieved from Animal Husbandry Division. Development Livestock Department.
Bradley, D. G., MacHugh, D. E., Cunningham, P. and Loftus, R. T. (1996). Mitochondrial diversity and the origins of African and European cattle. Proceedings of the National Academy of Sciences of the United States of America. 93:5131-5135.
Brown, W. M., George, M., Jr. and Wilson, A. C. (1979). Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America. 76:1967-1971.
Charoensook, R., Gatphayak, K., Sharifi, A. R., Chaisongkram, C., Brenig, B. and Knorr, C. (2012). Polymorphisms in the bovine HSP90AB1 gene are associated with heat tolerance in Thai indigenous cattle. Tropical Animal Health and Production. 44:921-928. doi:10.1007/s11250-011-9989-8.
Development, D. O. L. (2015). Livestock information: Number of livestock in 2015. Retrieved from Ministry of Agriculture and Cooperatives, Thailand.
Foote, R. H. (2001). The history of artificial insemination: Selected notes and notables. Retrieved from https://www.asas.org/docs/publications/footehist.pdf?sfvrsn=0.
Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series. 41:95-98.
Henkes, L. E., Silva Jr, W. A., Moraes, J. C. F. and Weimer, T. A. (2005). Mitochondrial control region genetic diversity and maternal ancestry of a Brangus-Ibage cattle populations. Genetics and Molecular Biology. 28:60-66.
Ilie, D. E., Cean, A., Cziszter, L. T., Gavojdian, D., Ivan, A. and Kusza, S. (2015). Microsatellite and Mitochondrial DNA Study of Native Eastern European Cattle Populations: The Case of the Romanian Grey. PLoS ONE, 10:e0138736. doi:10.1371/journal.pone.0138736.
Jirajaroenrat, K. B. P. and Tuntivisoottikul K. (2008a). Genetics diversity of Thai indigenous beef cattle lines using microsatellites. Retrieved from The 13th animal science congress of the Asian-Australasian association of animal production societies Hanoi: Vietnam September 22–26: http://www.meatnet.kmitl.ac.th/animalref/data/publication/8.pdf.
Jirajaroenrat, K. B. P. and Tuntivisoottikul, K. . (2008b). Genetic diversity of central Thailand beef cattle revealed by mitochondrial DNA data. Retrieved from The 13th animal science congress of the Asian-Australasian association of animal production societies Hanoi: Vietnam September 22–26: http://www.meatnet.kmitl.ac.th/animalref/data/publication/5.pdf.
Kornphan, P., Akaboot, P., Duangjinda, M., Phasuk, Y. and Pakdee , P. (2012). Genetic variation and cluster analysis of Thai native cattle using mitochondrial DNA (mtDNA). Khon Kaen Agriculture Journal. 40:362-366.
Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution 33:1870-1874. doi:10.1093/molbev/msw054.
Malau-Aduli, A. E. O., Nishimura-Abe, A., Niibayashi, T., Yasuda, Y., Kojima, T., Abe, S., Oshima, K., Hasegawa, K. and Komatsu, M. (2004). Mitochondrial DNA polymorphism, maternal lineage and correlations with postnatal growth of Japanese black beef cattle to yearling age. Asian-Australasian Journal of Animal Sciences. 17:1484-1490.
Malik, A., Laily, M. and Zakir, M. I. (2015). Effects of long term storage of semen in liquid nitrogen on the viability, motility and abnormality of frozen thawed Frisian Holstein bull spermatozoa. Asian Pacific Journal of Reproduction. 4:22-25. doi:https://doi.org/10.1016/S2305-0500(14)60052-X.
Nabholz, B., Glemin, S. and Galtier, N. (2008). Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis. Molecular Biology and Evolution 25:120-130. doi:10.1093/molbev/msm248.
Office, P. P. L. (2013). The annual database of animal farmers in Phetchaburi (2013). Retrieved from http://pvlo-pbr.dld.go.th/images/phocadownload/dataanimal/data_beef_56.pdf.
Osothongs, M., Khemsawat, J., Sarakul, M., Jattawa, D., Suwanasopee, T. and Koonawootrittriron, S. (2016). Current situation of beef industry in Thailand paper presented at the International Symposium: “Dairy Cattle Beef Up Beef Industry in Asia: Improving Productivity and Environmental Sustainability” Swissotel Le Concorde, Bangkok, Thailand.
Paisan, W. (2018). Livestock Semen Production Centre Retrieved from http://en.dld.go.th/index.php/en/focus-menu/biotechnology-menu/livestock-semen-production-centre.
Richardson, B. N., Larimore, E. L., Walker, J. A., Utt, M. D., DeJarnette, J. M. and Perry, G. A. (2017). Comparison of fertility of liquid or frozen semen when varying the interval from CIDR removal to insemination. Animal Reproduction Science 178:61-66. doi:https://doi.org/10.1016/j.anireprosci.2017.01.010.
Sarataphan, N., Chuensuk, S., Apimeteetumrong, M., Yiengvisawakul, W., Teepatimakorn, S. and Yungrahang, S. (2017). Genetic diversity of maternal lineages in Thai-native cattle by mitochondrial DNA analysis. Khon Kaen Agriculture Journal. 45:601-612.
Schutz, M. M., Freeman, A. E., Beitz, D. C., and Mayfield, J. E. (1992). The importance of maternal lineage on milk yield traits of dairy cattle. Journal of Dairy Science. 75:1331-1341. doi:10.3168/jds.S0022-0302(92)77884-9.
Schutz, M. M., Freeman, A. E., Lindberg, G. L., Koehler, C. M., and Beitz, D. C. (1994). The effect of mitochondrial DNA on milk production and health of dairy cattle. Livestock Production Science. 37. doi:10.1016/0301-6226(94)90123-6.
Sharma, R., Kishore, A., Mukesh, M., Ahlawat, S., Maitra, A., Pandey, A. K., and Tantia, M. S. (2015). Genetic diversity and relationship of Indian cattle inferred from microsatellite and mitochondrial DNA markers. BMC Genetics. 16:73. doi:10.1186/s12863-015-0221-0.
Shoubridge, E. A. and Wai, T. (2007). Mitochondrial DNA and the Mammalian Oocyte Current Topics in Developmental Biology. Academic Press. 77:87-111.
Srirattana, K., McCosker, K., Schatz, T., and St. John, J. C. (2017). Cattle phenotypes can disguise their maternal ancestry. BMC Genetics. 18:59. doi:10.1186/s12863-017-0523-5.
Troy, C. S., MacHugh, D. E., Bailey, J. F., Magee, D. A., Loftus, R. T., Cunningham, P., Chamberlain, A. T., Sykes, B. and Bradley, D. G. (2001). Genetic evidence for Near- Eastern origins of European cattle. Nature. 410:1088-1091. doi:10.1038/35074088.
Wangkumhang, P., Wilantho, A., Shaw, P. J., Flori, L., Moazami-Goudarzi, K., Gautier, M., Duangjinda, M., Assawamakin, A. and Tongsima, S. (2015). Genetic analysis of Thai cattle reveals a Southeast Asian indicine ancestry. PeerJ 3:e1318. doi:10.7717/peerj.1318.
