Endophytic fungi in agriculture: Diversity, functions, and prospects for bioprotection.

Main Article Content

Rezaee Danesh, Y.

Abstract

Endophytic fungi, residing within plant tissues without causing harm, play a pivotal role in agricultural ecosystems by enhancing plant health and resilience. This review explores the diverse taxa of endophytic fungi and their multifaceted functions, including promotion of plant growth, enhancement of nutrient uptake, and facilitation of stress tolerance against biotic and abiotic challenges. Through symbiotic interactions, these fungi can induce systemic resistance in plants, offering a natural alternative to chemical pesticides for the management of plant pathogens and pests. Recent advances in molecular techniques have unveiled the complex diversity of endophytic communities, revealing their ecological significance and potential for biotechnological applications. The integration of endophytic fungi into sustainable agricultural practices holds promise for bioprotection, contributing to food security while minimizing environmental impacts. This review discusses various strategies for harnessing the beneficial properties of endophytic fungi, including inoculation protocols and the selection of compatible plant-fungal combinations. Furthermore, it addresses the challenges and prospects for future research, emphasizing the need for a greater understanding of the interactions between endophytes, host plants, and environmental factors. By leveraging the potential of endophytic fungi, agriculture can transition towards more resilient, sustainable, and environmentally friendly practices, paving the way for innovative solutions in crop management and protection.

Article Details

How to Cite
Rezaee Danesh, Y. (2025). Endophytic fungi in agriculture: Diversity, functions, and prospects for bioprotection. International Journal of Agricultural Technology, 21(6), 2149–2168. https://doi.org/10.63369/ijat.2025.21.6.2149-2168
Section
Original Study

References

Bhardwaj, M., Kailoo, S., Khan, R. T., Khan, S. S. and Rasool, S. (2023). Harnessing fungal endophytes for natural management: a biocontrol perspective. Frontiers in Microbiology, 14:1280258. DOI: https://doi.org/10.3389/fmicb.2023.1280258

Bódalo, A., Borrego, R., Garrido, C., Bolivar-Anillo, H. J., Cantoral, J. M., Vela-Delgado, M. D., González-Rodríguez, V. E. and Carbú, M. (2023). In vitro studies of endophytic bacteria isolated from ginger (Zingiber officinale) as potential plant-growth-promoting and biocontrol agents against Botrytis cinerea and Colletotrichum acutatum. Plants (Basel), 12:4032. DOI: https://doi.org/10.3390/plants12234032

Chen, J., Akutse, K. S., Saqib, H. S. A., Wu, X., Yang, F., Xia, X., Wang, L., Goettel, M. S., You, M. and Gurr, G. M. (2020). Fungal endophyte communities of crucifer crops are seasonally dynamic and structured by plant identity, plant tissue and environmental factors. Frontiers in Microbiology, 11:1519. DOI: https://doi.org/10.3389/fmicb.2020.01519

Cheng, C. Y., Zhang, M. Y., Niu, Y. C., Zhang, M., Geng, Y. H. and Deng, H. (2023). Comparison of fungal genera isolated from cucumber plants and rhizosphere soil by using various cultural media. Journal of Fungi (Basel), 9:934. DOI: https://doi.org/10.3390/jof9090934

Doty, S. L., Joubert, P. M., Firrincieli, A., Sher, A. W., Tournay, R., Kill, C., Parikh, S. S. and Okubara, P. (2022). Potential biocontrol activities of Populus endophytes against several plant pathogens using different inhibitory mechanisms. Pathogens, 12:13. DOI: https://doi.org/10.3390/pathogens12010013

Fontana, D. C., de Paula, S., Torres, A. G., de Souza, V. H. M., Pascholati, S. F., Schmidt, D. and Dourado Neto, D. (2021). Endophytic fungi: biological control and induced resistance to phytopathogens and abiotic stresses. Pathogens, 10:570. DOI: https://doi.org/10.3390/pathogens10050570

Giehl, A., Dos Santos, A. A., Cadamuro, R. D., Tadioto, V., Guterres, I. Z., Prá Zuchi, I. D., Minussi, G. D. A., Fongaro, G., Silva, I. T. and Alves, S. L. Jr. (2023). Biochemical and biotechnological insights into fungus–plant interactions for enhanced sustainable agricultural and industrial processes. Plants (Basel), 12:2688. DOI: https://doi.org/10.3390/plants12142688

Gowtham, H. G., Hema, P., Murali, M., Shilpa, N., Nataraj, K., Basavaraj, G. L., Singh, S. B., Aiyaz, M., Udayashankar, A. C. and Amruthesh, K. N. (2024). Fungal endophytes as mitigators against biotic and abiotic stresses in crop plants. Journal of Fungi (Basel), 10:116. DOI: https://doi.org/10.3390/jof10020116

Grabka, R., d'Entremont, T. W., Adams, S. J., Walker, A. K., Tanney, J. B., Abbasi, P. A. and Ali, S. (2022). Fungal endophytes and their role in agricultural plant protection against pests and pathogens. Plants (Basel), 11:384. DOI: https://doi.org/10.3390/plants11030384

Nursyazwani Maadon, S., Ahmad Wakid, S., Izni Zainudin, I., Syahani Rusli, L., Syahril Mohd Zan, M., Hasan, N. A., Abu Shah, N. A. and Rosseleena Rohani, E. (2018). Isolation and identification of endophytic fungi from UiTM Reserve Forest, Negeri Sembilan. Journal of Sustainability Science and Management, 13:111-119. DOI: https://doi.org/10.17576/jsm-2018-4712-12

Paplomatas, E. J. (2004). Molecular diagnostics for soilborne fungal pathogens. Journal of Plant Pathology, 86:257-261.

Ponchon, M., Reineke, A., Massot, M., Bidochka, M. J., Thiéry, D. and Papura, D. (2022). Three methods assessing the association of the endophytic entomopathogenic fungus Metarhizium robertsii with non-grafted grapevine Vitis vinifera. Microorganisms, 10:2437. DOI: https://doi.org/10.3390/microorganisms10122437

Redman, R. S., Kim, Y. O., Cho, S., Mercer, M., Rienstra, M., Manglona, R., Biaggi, T., Zhou, X. G., Chilvers, M., Gray, Z. and Rodriguez, R. J. (2021). A symbiotic approach to generating stress tolerant crops. Microorganisms, 9:920. DOI: https://doi.org/10.3390/microorganisms9050920

Sharma, D. K., Jha, D. K. and Pandey, R. R. (2010). Molecular approaches in arbuscular mycorrhizal research: a review. African Journal of Microbiology Research, 4:1113-1120.

Torres-Mendoza, D., Ortega, H. E. and Cubilla-Rios, L. (2020). Patents on endophytic fungi related to secondary metabolites and biotransformation applications. Journal of Fungi (Basel), 6:58. DOI: https://doi.org/10.3390/jof6020058

Wen, J., Okyere, S.K., Wang, S., Wang, J., Xie, L., Ran, Y. and Hu, Y. (2022). Endophytic fungi: an effective alternative source of plant-derived bioactive compounds for pharmacological studies. Journal of Fungi (Basel), 8:205. DOI: https://doi.org/10.3390/jof8020205

Wijayawardene, N. N., Bahram, M., Sánchez-Castro, I., Dai, D. Q., Ariyawansa, K. G. S. U., Jayalal, U., Suwannarach, N. and Tedersoo, L. (2021). Current insight into culture-dependent and culture-independent methods in discovering ascomycetous taxa. Journal of Fungi (Basel), 7:703. DOI: https://doi.org/10.3390/jof7090703

Zenteno-Alegría, C. O., Yarzábal Rodríguez, L. A., Ciancas Jiménez, J., Álvarez Gutiérrez, P. E., Gunde-Cimerman, N. and Batista-García, R. A. (2024). Fungi beyond limits: the agricultural promise of extremophiles. Microbial Biotechnology, 17:e14439. DOI: https://doi.org/10.1111/1751-7915.14439